Scaffold JGI24766J26685

Basic Information
Taxon OID	3300002161 Open in IMG/M
Scaffold ID	JGI24766J26685_10000044 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002161 Open in IMG/M

Scaffold ID

JGI24766J26685_10000044 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26914
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (37.21%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

26914

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (37.21%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F030057	Metagenome / Metatranscriptome	186	Y
F035672	Metagenome / Metatranscriptome	171	Y
F043831	Metagenome / Metatranscriptome	155	Y
F048257	Metagenome	148	N
F088525	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000004416	F088525	N/A	MTLPIRQSELNAVGFTGYFPALSWRQRKEVAAMTLNRVGRRQDAFLLEINNVNAVQGITYVADVPPLRAGR*
JGI24766J26685_1000004418	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPVAGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLLNNDVDGFTRANQATLDTRAIASDYLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLESTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRNNVYFVDPNILIEAEQQFNVKLSFPSGIVPVLATNVVNNDTNPLKVGVILDGLLLRPVQ*
JGI24766J26685_1000004419	F016141	AGGA	MSPEILDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALQDSAMEKLQSVMNLGVLEISFAQKLYYQIARPFVQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARSDYRATSVYNIDPIQIIEPEIQIQAALNFPNGNTPNFTNTALDTANGPQTPSIELGLIFDGYVIRPSQ*
JGI24766J26685_1000004420	F024095	GGCGG	MDNTNSLPFTYIVTSQLGAAVGATGSATLIMQADSRFELMGVMATGGNLATSEDALQYPNSFTVSIRDQTTGRDLMSAPVPQRIFAGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAVNNITVALHGYKIIL*
JGI24766J26685_1000004421	F014837	N/A	MIQRNINPKPRFVTLTASTPNTGAFVGVPLATLWKAAFFRFPQDSIIHYISINSTFLANGAASQVIGAIAYGQGQDNIGINLGAGLDNFTDEILWRDELLNPAAGVVTADKSTQIVMNEFFVHTGTGIGVYVNGLAGNANINATIAFNPIAEWVNFREPTSGARL*
JGI24766J26685_1000004425	F035672	N/A	MHNLHDTIRDLGIGVGGPASGLFIANIVPDPVMANVSVTLGSLAALTVIIKNILDFWNNRNK*
JGI24766J26685_1000004427	F023295	N/A	VKHLRQLSDRVKLLLISRRSLVLLSMLQGLGCQTRVILVPEGQPVMLAEPVKAKVYAFDANGKLTPSSNRVLLPAGWYALPRK*
JGI24766J26685_1000004429	F048257	GGA	MIQFPSSVAARKCLKGEGCGETVYWILRRTLLINSGLRLAGEKEKLWKKSLYGSLAVQAFVTAWTAAHMDEPVASLPSGEVAVAGDVVGILGTYLTRSAIVGTGLWLSGDRKNLLRNTLISTAMIQATVLLWAKDQEI*
JGI24766J26685_1000004442	F043831	N/A	MTSTQLAAIAYQLGAIDSIRNQLFQMTLDLNDLGEGPLSVKLELAVQAFEQRAAEHSKILNQYANETLICPTQNLQP*
JGI24766J26685_100000447	F030057	N/A	MAVAYNLKKTLGGSLWKWQDGVEKVFTIIGPIRAGKAVSNPRSGIAKAPDVMTVKDVEDGNEKDVLVGAVLRSSLTENYPDDSYVGLTFACTQGAVKLGTRYKTMTVAEVEVDNAPSKKAKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24766J26685_10000044

Overview

Ecosystem & Geography

Associated Families

Sequences