NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3t6FKB1_1034267

Scaffold M3t6FKB1_1034267


Overview

Basic Information
Taxon OID3300002138 Open in IMG/M
Scaffold IDM3t6FKB1_1034267 Open in IMG/M
Source Dataset NameM3t6FKB1 (102f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)65.3915Long. (o)23.49916667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001009Metagenome / Metatranscriptome807Y
F020009Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
M3t6FKB1_10342672F020009AGGAGMALPDDIEQTEPTAEEIAQARENALAAGRPASWVWDESVVSYVAPIPIPTDGYPYLWDETVGNWTAFPGFPRN*
M3t6FKB1_10342673F001009N/AMASNLNSEFNYRYQVIGSTPWEKIKTLQGFLVGRKRAAVLEECAELKYQAKLEEIKHLKTVPALPHILLNLQADLLETQSHLADQAHAFELNRKEIVILEKLMNELYMEVEPTRLKHEDGTPYTDDEMFEVNANYEFTVTVGREIQSEIIAMGRPSPAKLLNAMSNPQTLETLMQIGIVPQGTKLLTKDDVTIQITNESTTTKITDETLALQ*
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