NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C687J26620_1001167

Scaffold C687J26620_1001167


Overview

Basic Information
Taxon OID3300002097 Open in IMG/M
Scaffold IDC687J26620_1001167 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5767
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008189Metagenome / Metatranscriptome337Y
F105003Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
C687J26620_100116713F008189AGGGGGMDYQAELKRLNEGGNYWKPKVGQYKVKTLTELEEADPFVRKHEGAEDEFSPQAKIIILVNGEEKIWTFGKGKTPASTYGQLIDFATKNNNSLKDKEFTVVVKSDGTKNDYTIV*
C687J26620_10011675F105003N/AMTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL*

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