| Basic Information | |
|---|---|
| Taxon OID | 3300002091 Open in IMG/M |
| Scaffold ID | JGI24028J26656_1000119 Open in IMG/M |
| Source Dataset Name | Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34375 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (79.41%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brandenburg, Germany | |||||||
| Coordinates | Lat. (o) | 53.1666 | Long. (o) | 13.0333 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F012328 | Metagenome / Metatranscriptome | 281 | Y |
| F026827 | Metagenome / Metatranscriptome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24028J26656_100011911 | F026827 | AGGA | MSNPQEKAINQKRGPTVGNAGTTSKRNDFMDAKSRSSSEKSTLARMVTNALEMRGRGQAGYVNPALESLHDNTGPKTNPTANGSGLSNKYKQPKK* |
| JGI24028J26656_100011912 | F012328 | N/A | MKKLNTPAVENIWDETIDPVTLEPEVTEEKTVQVSKQTKTTKQIKSAQSDFDLEGLMTDFPTAKDLERFVYDETSVVLNLKGRANKLKYQIALDVLNGEDIDPKYIGGNNPYIDKAEMIPTEDLKPTPARDPALPDQALIQNSFYSPFIVHPDPDMRAQDKKVHMLFRKYKNGMISYEILGPLEQKPYGEKIDKFGRIRPEIIKWIDPRTGEQTVMREDGTLTPQGKRLRATMQTFRVNNTNQWDVWIDRELVGLEDSVAHNVWDLSK* |
| JGI24028J26656_100011920 | F001299 | AGGAG | MINTIMNDINKPEYLSDKDPEKNHNYWRQDHGGMITNHNGVADKLLQNDKLYNNLKGDWQRTDWNKGKNIKVTTGREDGKFYIKREQTNAKAIAEYCKEYRKAAEAGIPDPLAPLMPDGKLGFKWMELPTVVSIRISDQYFGGMPWNAIKNDRILKAQFYRVVQQEYPQYVCYPGGKLPIPVAVSYPTRVGETKFFKGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |