Scaffold JGI24028J26656

Basic Information
Taxon OID	3300002091 Open in IMG/M
Scaffold ID	JGI24028J26656_1000118 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002091 Open in IMG/M

Scaffold ID

JGI24028J26656_1000118 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34462
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (63.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34462

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (63.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.1666

Long. (^o)

13.0333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004517	Metagenome / Metatranscriptome	434	Y
F007848	Metagenome	343	Y
F011648	Metagenome / Metatranscriptome	288	Y
F021938	Metagenome / Metatranscriptome	216	Y
F040482	Metagenome / Metatranscriptome	161	N
F042791	Metagenome	157	Y
F053781	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100011811	F004517	GGAG	MKHMDHKYPKGNALLREHKESTYEKNLADRLARRKMIANKVKDLDKEVK*
JGI24028J26656_10001182	F021938	AGGAG	MICPKCGYSEGNHVEAKQSDEEFFLEWWTPTIGEEAAKASWQDKLAMKTRVAPTVMSDIEGHISMADGTWVSSRSKHRENLKRNNCIELGNDVPTQQKVHEISRKDQEHRKRQIAELAYAKLK*
JGI24028J26656_100011823	F053781	AGGA	MTLKVTEEFLILKLLYKMYEDALQRKDLTQMLELSVDIAESAEKLEQLTCDYINGV*
JGI24028J26656_100011828	F040482	N/A	MMTWNLRLVNLSNPYEDYFEIREVYYDSMGKPIGHSKAAIGGEDRLEVDRYIELAKLALDKPILKFAENEDTSKDYQRES*
JGI24028J26656_100011831	F011648	AGGAG	MSEQDQDFQSFQQHLERIFKDLDDGVFLTADEIGDLRYACGLPSPVKPNPVLKAVFDDFSTIFRSAK*
JGI24028J26656_100011835	F007848	AGGA	MKDFLGACLLGAVLGAMFAYGVPAKAQSYPMTDNRGNNVGSVQIQGNTAQFVNAAGVTTQTATLYPNQVIIQTPQGVTTSVTGTTLYTVPFSPPIVPTVRVLQ*
JGI24028J26656_10001184	F042791	AGGCGG	MFASAFQANAFQNNAFQVYVPPIPTSQTGGDGWTKEEWLRAQRLNRKIAERQRKLIQATKDDNASRKQGIRDLVLPVAKVKKSKVQLKQEVKADIPLAETEDLQRSISYLERQRDNILAAVAYRNQQTLIQQQLLYMEAKRLEELDDEESVLILLH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24028J26656_1000118

Overview

Ecosystem & Geography

Associated Families

Sequences