NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24806J26614_1006066

Scaffold JGI24806J26614_1006066


Overview

Basic Information
Taxon OID3300002090 Open in IMG/M
Scaffold IDJGI24806J26614_1006066 Open in IMG/M
Source Dataset NameSoil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2749
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location NameManhattan, Kansas, USA
CoordinatesLat. (o)39.214Long. (o)-96.5852Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036140Metagenome / Metatranscriptome170Y
F098247Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
JGI24806J26614_10060661F036140N/AMRKITATLKGDGPILREVLNYLVTKAGMEVVGESSDSLDLLCSIDRLRPEVVFLWASDGLKEPGIVSHLLQEFPHLKVVVVSQNHFTISDVGSRTRHCSDLSMESIRASVVESLAQ*
JGI24806J26614_10060665F098247GAGGMTVDLLRWPTAARRFQEVIAAAVESFSRHGRTFDYRRSALQQLRERILELPLPDQMEALVVVNNELTEGECVDICFSLRPELN*

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