NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2236_1070048

Scaffold GOS2236_1070048


Overview

Basic Information
Taxon OID3300001968 Open in IMG/M
Scaffold IDGOS2236_1070048 Open in IMG/M
Source Dataset NameMarine microbial communities from Lake Gatun, Panama - GS020
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2767
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameLake Gatun, Panama
CoordinatesLat. (o)9.164444Long. (o)-79.83611Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F006260Metagenome / Metatranscriptome377Y
F010081Metagenome / Metatranscriptome308Y
F010397Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
GOS2236_10700483F010081N/AMKEHIDAVILKHCEILKTVDTTKTIPLVVKQLDKMVYDMYRELYGLRDIRSDHYYLNSFTADNKKGHCC*
GOS2236_10700486F006260N/AMEQELIIKDKIKNKVVIQHDDLKFDGKNITIPGYYVDIILDYISDYNLSKLSQADLDDHAAFRNFLLDIQEHKNQGN*
GOS2236_10700488F001840N/AMKEPDSKFLICDCYQHGLLVEKYPHDEEVCLSIFERGLEGRILSFSERLRWCWQILRYGSPWSDFIILNTENQKQLKEFLK*
GOS2236_10700489F010397AGGAGMNPNEFERTKPTITMQKINNLISLIDEERVKTEILYKDRVRSLETIVELLKDMKVSFKKGE*
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