NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2242_1003107

Scaffold GOS2242_1003107


Overview

Basic Information
Taxon OID3300001967 Open in IMG/M
Scaffold IDGOS2242_1003107 Open in IMG/M
Source Dataset NameMarine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1882
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDevil's Crown, Floreana Island, Equador
CoordinatesLat. (o)-1.2161111Long. (o)-90.422775Alt. (m)Depth (m)2.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023614Metagenome / Metatranscriptome209Y
F060823Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
GOS2242_10031071F023614AGGAGMVARAANNLVAFGHTHGIGEDVEMFTIDGGATLANETNPGEAMDFIVRVIEEKCTIIAVGAEDGAGAFRIMVQGSLWTPADLQTAIRALGTTVGANNYNASGATVGAFTF*
GOS2242_10031075F060823AGGAMKAREFTINVPINIKINGDGDPEIDMPSAEPEEQPGQDVLDPNPVMVPPLQQNIELKKAALGKEGDVVDKITQDQDQSDPLEDVDDGKNKLVGVVFAGDDSHLED*
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