| Basic Information | |
|---|---|
| Taxon OID | 3300001965 Open in IMG/M |
| Scaffold ID | GOS2243_1042067 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Coastal Floreana, Equador - GS028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1779 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Coastal Floreana, Equador | |||||||
| Coordinates | Lat. (o) | -1.2169445 | Long. (o) | -90.319725 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F022908 | Metagenome / Metatranscriptome | 212 | Y |
| F024812 | Metagenome / Metatranscriptome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| GOS2243_10420672 | F002093 | AGGAGG | MAYDSSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISDVSGEVTEPRASANTAALQLAMEAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISGTTTVAAIQAAIRALNALTPDKVTATISSATAADRDMGDTSVGA* |
| GOS2243_10420673 | F024812 | AGGAGG | MPITKNNFSHVTNTELEGVETSSFTVDFISDMSAETGDLSTGSSTAGLEATRAVISQFINILSEGPLVDSNTQKTYTVRTDCLGTLISGNTLRDEIRALHGAGNVAATVSSATVTATDIGILTANAV* |
| GOS2243_10420674 | F022908 | N/A | MPTHLDEAIKIILSPSSKLRDKTPRIYQLPEEKNMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIVLQVPPFDKYDDQSEIFTLIRQPDERWWSGIKDMFYFMPYYTWWTNEEIMQQWPHFTRGTLRLHDVMEEVKPTHLIKCDDGLNDRIIKFAKTHGLLCYGNIPHEKALRHSKPDIKKLEDLGVKELKAWLRKNPDRQKQLEEYLDPDWQYWEQVEYQD* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |