Scaffold RCM47

Basic Information
Taxon OID	3300001848 Open in IMG/M
Scaffold ID	RCM47_1024325 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001848 Open in IMG/M

Scaffold ID

RCM47_1024325 Open in IMG/M

Source Dataset Name

Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8156
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

8156

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Santar?m, Para, Brazil
Coordinates	Lat. (^o)	-2.484383	Long. (^o)	-55.0075	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Santar?m, Para, Brazil

Coordinates

Lat. (^o)

-2.484383

Long. (^o)

-55.0075

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F025723	Metagenome / Metatranscriptome	200	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
RCM47_102432512	F025723	N/A	ISNAKFHHVRLDLSPRLRVRLINEMIDQHILWANAWGIPVICSTSIRMDHGAFMRIHEKRGFRVTGSYAWIRTEDAMKWMQK*
RCM47_10243254	F004695	AGGA	MLDKQNLVVESMETPPQNKGMEYQIAHEVYLKMVDYLRLTQAKNTLNRFSDYHYLNIQVANSTEPVRGIDYIHPVVAPGIDYATAVITKCLMPNGKINFEFERFAENDDEQSRQSTEMVKYMLNSKNDPYQIVRDWAQDALLHKNGIVMVMPIREPIVQYKEVEGTRDQLRSFEIMAAEKGLEAKRQNMRKIDVDLEGVMQETMMSETEPTPDEMADAMKAATVYRAKYKLTGYSTTIRVKHVAQHYFVCNPTIPQIQYQDFCGFYDPMTIHEAKSQYPYIDVEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMITTAWIRKDIDNDGEEEIVEVCFSGSYIIYEKEVDFIPLANMCPKPIVGNFFGYSMGERLVPMQEYATAIARAEMSFALQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPNKHVFEFQPMQGNLAYVQSAMTRFEQDRMAMIGMTSPGDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIALKDVIYLTWKTLIQYSDDYNIQQLAGVCGKGKPFMDALSMQNFEFIDRKMINIDLALGFLSDENRLTRQQLITQTQAQFTQMVGQLDPSAPELFFKARRPFEDTLRVLGVKDVDAYLPTLEEAAKMLQAKQAQGPDAETQVNLSKAKLNDANTQLTLKKADDIDTDNYFEALAASRGKLRAVQVD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold RCM47_1024325

Overview

Ecosystem & Geography

Associated Families

Sequences