NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM47_1007743

Scaffold RCM47_1007743


Overview

Basic Information
Taxon OID3300001848 Open in IMG/M
Scaffold IDRCM47_1007743 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7796
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060705Metagenome / Metatranscriptome132N
F062696Metagenome130N

Sequences

Protein IDFamilyRBSSequence
RCM47_100774314F062696N/AMVKSLCKTFPYSSLADSPCYLLKIKMDGRYRIFYTLCLVSCLTSCSSEHRLLRLLKNHPLLYETFRYDSIRVKTALVQDSIFFFHKEKDTLYFNNATIYRNSDTIRLRQSCPPCTTYITKQILQPTQKYIKEKGYKRTLREKLEDAIFPIIIGILFGFIVTRK*
RCM47_10077437F060705N/AMAISSLNFIISQFETEKYRYFAIYDEDGDRVYLQNDLIDVESAISKLKNFFKDNQGYYTIYVMSKKLLNKNNLKSRDDNTIAKYNVEVSMPVLPQGVNGLTGMGGSSMLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHQHYREVKELQDRIAKMEEESSKAKGMGAIVDRLGEQFSDPNVLLGLISGVSQLFKKESVVPMHGVSREDIMPMNGVDEQVINNISTRREKMVGAVNFLRQHDKDFPENISRLAELAKNKPAIYSMAVSYLNNL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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