Scaffold RCM41

Basic Information
Taxon OID	3300001847 Open in IMG/M
Scaffold ID	RCM41_1019452 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001847 Open in IMG/M

Scaffold ID

RCM41_1019452 Open in IMG/M

Source Dataset Name

Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2387
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2387

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Santar?m, Para, Brazil
Coordinates	Lat. (^o)	-2.484383	Long. (^o)	-55.0075	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Santar?m, Para, Brazil

Coordinates

Lat. (^o)

-2.484383

Long. (^o)

-55.0075

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F025723	Metagenome / Metatranscriptome	200	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM41_10194521	F006264	N/A	MEDHSTIFRQKLSTQVEVCARKALEWLQKDLQNEKKLSPQEIYYLSSASEMLLRMRDMYGKK*
RCM41_10194522	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQISLDLIGKPKEDQYQVAKNALEGKKIPSDYQTDLNPYIDKKELIPMDELKPMPARPADLPDVDSQVHFFGATNMPHPEDPQSDRKVQINFKKYDNGVITYQIMGPIEQQAVGERINKFGQVVPEKYTWLDPRTPESVLRRADGTYTEKGRGLYAYCVGEKGAGIWSLIDRETLNIAQKNVTNPWA*
RCM41_10194524	F040590	GAGG	MSAYGKIISGGKAMTKGLTAGINDKLAGFAKENERRKVIAGAVGRAFDQNPLSDNHLNNINGGKFTTPKLPAKV*
RCM41_10194527	F012670	AGGAGG	MPVDIFGEIRPEGSEVSSEKAKAAAKAQYYEKKALKLATGKRDPRDSFTDNPQNRHTKGRPKSIVNRVTEYGALFNKLNEERLDKGLSPLRTAMDVLIEAMNSDELDLKEKAKIAEKLATFESSRAPIISIEHVQNISKEEEVTADEALDDFLQSLKKV*
RCM41_10194528	F025723	N/A	NAKFHHLDLSLPAKQRVRMINEMIDQHILWAHTWGIPLICSTSIRSEHDGFMRIHKKRGFTVNGSYAWIRTEEAMKCL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold RCM41_1019452

Overview

Ecosystem & Geography

Associated Families

Sequences