NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM41_1003780

Scaffold RCM41_1003780


Overview

Basic Information
Taxon OID3300001847 Open in IMG/M
Scaffold IDRCM41_1003780 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1736
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F013889Metagenome / Metatranscriptome267Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
RCM41_10037801F085130N/AAYLIVTDESVAYFVTLISKLIKFQYEKTKWWMLHNPANPIIKHLMWRKALRLAKELEKELKK*
RCM41_10037802F013889N/AMSRTYRSTENWHSGALRFPHTFSEIRQLDGILHEEDLEGLPISGVNHMRAREHQLPTAWDDKIISAYYEV*
RCM41_10037805F001881GGAGMTDRAQAFMNAIWDARNNQGADTEEKLVAAILKLVAENTTFYTAQNNLIVLDKNDILQLAEELIQ*
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