NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM20_106592

Scaffold ACM20_106592


Overview

Basic Information
Taxon OID3300001826 Open in IMG/M
Scaffold IDACM20_106592 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM20, ROCA_DNA104_0.2um_23b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)10.6822Long. (o)-54.4213Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010318Metagenome / Metatranscriptome305Y
F010571Metagenome302Y

Sequences

Protein IDFamilyRBSSequence
ACM20_1065923F010571AGGAGGMSMNTRQAIYIENLYEDFYEKHYEELSKTSDDVEWIENEASRLAEIDLDNFEMEG*
ACM20_1065924F003976GGAGGMSRLYNDYYFEKQDILDTLEKLDMNVRFLNAWVKEPMGFENAKYLLEKNANQEFKWFSRDMVKELVEEETNE*
ACM20_1065925F010318AGGAGGMNVDSDKPRYIECIYEAPITXXXXXXXXXXXXXXXXYIKYGTLYVDFKDGTSESYYNADVGETDYKWAVRESILTEDYDLVEGLN*
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