NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24522J20083_1003612

Scaffold JGI24522J20083_1003612


Overview

Basic Information
Taxon OID3300001717 Open in IMG/M
Scaffold IDJGI24522J20083_1003612 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0008Long. (o)-145.0003Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F005071Metagenome413Y
F017323Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
JGI24522J20083_10036122F017323N/AMFNNNERDNMNNPKNKVFLVIKKTSWNDGENWFDVAEHSEQKERAEQCIMALNTLNDDKKVSYIICEVAND*
JGI24522J20083_10036123F000423N/AMIRKYLTLFVRLLMIKEAIFYIKYYAKKHDMVIERKATLDENCFEGRHKKFGYPYKKYIDVWATEEINNGQPQYRTASKSWEINQTQTLDNK*
JGI24522J20083_10036124F005071GGAMTQLNTKEKXTLRDLIXIEIKSLTKVGYGQYKYXXXXYCAFLLKLGRKLKLDIQQKIKAKKVYR*
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