NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Abe_10092678

Scaffold Abe_10092678


Overview

Basic Information
Taxon OID3300001681 Open in IMG/M
Scaffold IDAbe_10092678 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1609
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameAbe, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.111307Long. (o)-176.989014Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Abe_100926783F005848GGAGMGFPIQRTYQFTGAAPALNTTVFMNDLQTLQNNFLVLTNNQIQDLVSNPPLLATQLYEFNLVKNGNSTAVRTFSSAINPNTSGRVSIGNVNMSSGNYQWSVKQTAGALANPQILVRYASPLN*
Abe_100926784F004537GGAGMPFSSNQLSVSQVPLLYPIRVICPAGTTTGISFPDQFLGRAISLKISNNDSANAASYDYNLNNQFQNLAASNFSTVDGAVVNYLTIIAGAAGTVLVEAQVLPLIKAEPEIEVQV*
Abe_100926785F032859GAGGMAFGGGGSGGSATVSAHTHNSTLSGDGGALSSTLTQLDSSPLYSRIIVGV*
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