| Basic Information | |
|---|---|
| Taxon OID | 3300001679 Open in IMG/M |
| Scaffold ID | TahiMoana_1022970 Open in IMG/M |
| Source Dataset Name | Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2212 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tahi Moana, Lau Basin, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.682131 | Long. (o) | -176.183363 | Alt. (m) | Depth (m) | 2230 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F001606 | Metagenome | 664 | N |
| F001712 | Metagenome / Metatranscriptome | 648 | Y |
| F031891 | Metagenome / Metatranscriptome | 181 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TahiMoana_10229701 | F031891 | GAG | LASELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLNRKKEQGSVHTDSQIDDLINNA |
| TahiMoana_10229702 | F000704 | GGTGG | MPHVNGELQPSQVRSISVYDVANYGTDLFLPITDVGLTETALTFSTATVTRDTSNSNQPLDSFPRVYSDTDSGLLLNEGDNTIYNQTYSFSPDMTAIIYKISLQFCACLTVSAYTSGTYNLGSLHIRITERSTNDSLLYENTFVSSAGNRTSTGTDLHWFTKDIVETIKVRKGNPIDIQLDLITTNGSGTRQEGYAPVAPLLKTAVMKQFYESGISLHLHPDLSHADGVFKYKKSRVSLLGQ* |
| TahiMoana_10229703 | F001606 | GAGG | MVYGYDDATFTALTTGTTETQINSGTALSAPDPAHGFLACVPYLQELGAFTVDESLLIAFRIQSDDVSVEPKKFVLPNINTGDGSFTSVQVPALLAYPIDTPLNGGEHLNLYAQPLTTNTVAPGVGATIIYSTTGTNGPEQYYTRPTNESAAGTAVGTRTQGGDMTIMGGNEISALYTVVSGATALASQHDVGYSEFLSPDFNTSMPYRVAVQPTATALGSNANAVTGGDGLMKYEMPRGQGIPLAENVTVTNYYTNRDTRTNASNFINFVRYTK* |
| TahiMoana_10229704 | F001712 | N/A | KVSKSIGSQWGKISKGAGVLAFLSNVTGSDMAASTGQPIGVRAMNFGNSLFGRISGFTPFKNAPGANIPQTIGIENIFNKWSGIGAASFIYGLLPLKQLPHKGKAKTLGKSLLSAGILSGLFMPGSGNPHTTNLLSPSNAITVSSSEVSYT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |