Scaffold Mariner_1055125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Mariner_1055125

Scaffold Mariner_1055125

Overview

Basic Information
Taxon OID	3300001522 Open in IMG/M
Scaffold ID	Mariner_1055125 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from Mariner/Tui Malila, Pacific Ocean, of black smokers
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1214
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tui Malila, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location Name	Mariner, ELSC, Pacific Ocean
Coordinates	Lat. (^o)	-20.064428	Long. (^o)	-176.171974	Alt. (m)		Depth (m)	1900
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019733	Metagenome	228	Y
F040334	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Mariner_10551251	F040334	N/A	MPSSQPDLNFGPSERYLPGKKLLEGDVLTINIVDFEQKEVDTDFGSKLEFHINVLSSSTDVVTPGKYTWRTVARAARLVHAYYCKSTLGKAVWSEWVWQLTVVENGVSLKTLNLDSDPNEDTTKHGTPTPGNTIAGDGE*
Mariner_10551252	F019733	N/A	MAKNDTFFLRTTLTSVLATYVSDNIDISAYTDPSRGRVLVVDNAYITYSTDGQGPIVAADVVASGTGGKSMGAQCCSEKQISLVEMSNNSLFSRSNVYATVATAGMITWLQMTDSLNPTTYESGFIIPTDAIHCGIDTGTAWAGELDVGFLFEVHTEKLSLQRIQELLVSLTAN*

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