NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10064357

Scaffold JGI24004J15324_10064357


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10064357 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_100643571F049044N/AAISKNNFSLNQNYELQGVDVTLLTVDFIVDVSAEVGDLTSGSTVAGLDMTRHAFAHQGLQILAEGPLVDSDTQKTYMVRTDNLDSLSSTTTIAALQAYIRTLDQSSSSFPGVTADLTGATVTETKIGILTANAVA*
JGI24004J15324_100643572F005720AGGAGMATSNATANMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNEMSKLVGTFGTIIAQSYALGCKATEKDAALATSIIEDELCDFYTFAVEGTPGQFNAADSAGDVNADPDQANASDPGVIADAEADIEVEILARISENDSAGGVHVDVRYLPADGVTSAGAEVVYGFNSARVNA*
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