NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10003266

Scaffold JGI24004J15324_10003266


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10003266 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6359
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F023484Metagenome210N
F031699Metagenome182Y
F044802Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_1000326610F044802N/AMKHDPTATALYRAREDLRMLETCPTWYDHLDKVEAAIAEEDRIYAIRVAAGWEQDEGGWQAPCPKTGKMIIEWDWISFGLTYPEDAQ*
JGI24004J15324_1000326611F019754N/AMNHNTDDLMLPSELEPQWPPSDEDIEAMELDAYDRQKLQDLIERELLMEEMAGVPTPAELNPNLK*
JGI24004J15324_1000326614F031699N/AMTLSDAARELELYAENDAKGEWIKSTLKNLSKHHKRGNFSLDLAIHSIERYCLTPAAKQYNLEHGSMTTPWHHIFPKSVRLEAAEVMARRYSAEFKLGNYW*
JGI24004J15324_100032667F023484N/AMNINTKAGSFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS*
JGI24004J15324_100032668F020110N/AMSTHLEVKARLSYARAMLERNIPTNTLATLISSKFHVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLAMLQHRLEVCVATGDDKAICSLIKAMNQAKQWNGYRTQSASPFA*
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