Basic Information | |
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Taxon OID | 3300001472 Open in IMG/M |
Scaffold ID | JGI24004J15324_10003266 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6359 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (33.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019754 | Metagenome | 228 | Y |
F020110 | Metagenome | 226 | N |
F023484 | Metagenome | 210 | N |
F031699 | Metagenome | 182 | Y |
F044802 | Metagenome | 154 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24004J15324_1000326610 | F044802 | N/A | MKHDPTATALYRAREDLRMLETCPTWYDHLDKVEAAIAEEDRIYAIRVAAGWEQDEGGWQAPCPKTGKMIIEWDWISFGLTYPEDAQ* |
JGI24004J15324_1000326611 | F019754 | N/A | MNHNTDDLMLPSELEPQWPPSDEDIEAMELDAYDRQKLQDLIERELLMEEMAGVPTPAELNPNLK* |
JGI24004J15324_1000326614 | F031699 | N/A | MTLSDAARELELYAENDAKGEWIKSTLKNLSKHHKRGNFSLDLAIHSIERYCLTPAAKQYNLEHGSMTTPWHHIFPKSVRLEAAEVMARRYSAEFKLGNYW* |
JGI24004J15324_100032667 | F023484 | N/A | MNINTKAGSFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS* |
JGI24004J15324_100032668 | F020110 | N/A | MSTHLEVKARLSYARAMLERNIPTNTLATLISSKFHVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLAMLQHRLEVCVATGDDKAICSLIKAMNQAKQWNGYRTQSASPFA* |
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