Basic Information | |
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Taxon OID | 3300001472 Open in IMG/M |
Scaffold ID | JGI24004J15324_10000047 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39630 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (63.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019852 | Metagenome / Metatranscriptome | 227 | Y |
F043948 | Metagenome / Metatranscriptome | 155 | Y |
F051948 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24004J15324_1000004721 | F019852 | AGGAG | MPVKFKPSQTTFVKGQGKVTQNYFIKNTSKQELIDYINKGQKPKIKQKCMNELTRRGIEIVWKTPSED* |
JGI24004J15324_1000004727 | F043948 | GGAG | MATVKKYNLAGVSTSLELGKQGSYITGNSSAIGFYTSGDALQKIAIANATVSTGAVTKAQLDETAADLVQHVTLDVDFDTAGSSNIATVTAGSRILSVTVDIPSAWASGGAGDYVEVGDTANGSRFIRSGDIDVTKVGQYHSQYQYEYVSEGVITAEVTNGAASAGTATVSVVLAGEATVTDYGSINNAQNSNNDLGNIA* |
JGI24004J15324_1000004748 | F051948 | AGGA | MVSKIKHWADVCKLHWKEIISLAVALHWLMDLLIIIPLSLTIGYFFGVHIGHSY* |
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