NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10094845

Scaffold JGI20157J14317_10094845


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10094845 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022889Metagenome / Metatranscriptome212Y
F063584Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_100948451F063584AGTAGMARLISRKQVEEVQDFIRDTSFAQGVSISGSLLVSQSFDLGSDPSEKSTITGSVELTGSLTIDGPLNFVGDQSLELTASVALESLDTQLFGGIKPEDFGAMDATIYVSSTSGDDTNDGRTQQFPVRTVKRAAELATAGDDGRFGLPTGSLFTGFRIEVSAGTYLEQNPIELPKNTTVWGAGLRVTKIVAKNENEDLFWVNSG
JGI20157J14317_100948452F022889N/ALMSRKVPKIYTGNTVKKRDRQSFKNFVLEVIKDTFINEFTPTSSSLDSSTETLFTLFLGSKDGNNDGDLLDRVDINGYRFNYEDLQVDNAYDYLDVYLYGVKQNRSKYVVKLFDGEGTELTSGQYASGSKEIRMVFNEDITRVPTEVPDNAFIIKGKIVEIQ*
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