NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20160J14292_10028780

Scaffold JGI20160J14292_10028780


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10028780 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2915
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009330Metagenome / Metatranscriptome319N
F063610Metagenome / Metatranscriptome129Y
F072209Metagenome121N

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_100287802F072209AGGMASRTLSLTDSTQLLLKGDSRNLTPQNAWEEGTNIRTALRLNPQMVRAWFLAELGRLIKFVDATKTIQDDDEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKXGELMEXCRKWEETRAERILERKHRPEXDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE*
JGI20160J14292_100287805F009330N/AVTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDREVDEGDGNR*
JGI20160J14292_100287807F063610GAGGMTKRQILHTKIHEKDGKRYKATTWDCTPVGHEDVYNLSRTEWELIEEPRNQMTLF*
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Biomedical Sciences Research Center "Alexander Fleming"
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