NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20160J14292_10017834

Scaffold JGI20160J14292_10017834


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10017834 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4155
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003106Metagenome / Metatranscriptome507N
F047385Metagenome / Metatranscriptome150Y
F071009Metagenome122N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_1001783414F003106AGGAMTEEKKTKGKAWRMREWGRTQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFMDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLXLLAMDDRSKAMKLKQFYDYEDERFTLWDSKCKAGLGAWLLEEIRIETGLWVMDFATGRQKGHKAERIVRATNEFT
JGI20160J14292_100178346F047385N/AMKIEQPSDNSLYVTIGNFTYYFDDSIDGENIVARWHLDDEETDTKEDLQIDDKLISKCQ*
JGI20160J14292_100178347F090089N/AMSVTYYLTDHNGNQIAFFYRVDNERYSTCPNILWACRQYPQFQGSASSKGEAIEAFKQTLKEIKKLSVPVRKVCKDCDISLQGMENEGTTCNDHNFNR*
JGI20160J14292_100178349F071009N/AMTTDPENLPSLDDASLDALIQHYLSLKQRLTDNVRVRERLVELQDEQLKRQIESLGNYEPIGDDIKNQLNQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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