NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ML7_10003463

Scaffold ML7_10003463


Overview

Basic Information
Taxon OID3300001336 Open in IMG/M
Scaffold IDML7_10003463 Open in IMG/M
Source Dataset NameML7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42123
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake → Benthic Lake Microbial Communities From British Columbia, Canada, For Chemocline Samples

Source Dataset Sampling Location
Location NameWetlands, British Columbia
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015850Metagenome / Metatranscriptome251Y
F017137Metagenome / Metatranscriptome242Y
F034145Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
ML7_1000346312F017137GAGGLPFQKIPAKQDPYTPGPFENERDIQRRQRYEAQEAKRAPRIQVDQVLTLNSWLIGVIIAFVASAIVSFNGITAVAVFVGLSTGWMAYLFFFFIELMYLLFLVAYLLLESRENEDSRGALAGMVFFAGVAVLANAFHTFDYWQWAFDEPRAWAGVVLSVSAPIAIISASKMGARVIFARPGVY*
ML7_1000346339F015850AGGAMGDLERSDLDERLLSLARRSPAEIAELTGLDAGFVAERVAYLLDSKDWLTDRQEERLLLIEAASLKDRAFAMLEDVGPQEFAGVANVVLKSLRLVSERLDARRRLVDSDIEKITAAHAKVFAQAFDAALQFIIAGFKAFEGVPDDADVDALVEQGLRRAGAVLDANLFE*
ML7_1000346356F034145N/AMNDPDHKEWDQWDFKLFKAHYILKDWYRNGIPVWWDESDRVTFDAKPRVSKSRAAIERASEKESKKKTKTHGLYYAAEPRLMDGENMPTRAEWLEEQERKNSTPEPRRRPPREPRILQGKKQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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