NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY94_10043509

Scaffold BBAY94_10043509


Overview

Basic Information
Taxon OID3300000949 Open in IMG/M
Scaffold IDBBAY94_10043509 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1250
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041247Metagenome / Metatranscriptome160N
F061913Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
BBAY94_100435091F061913N/ANFFVKCHNIYYDQQWLRDVLDSLKPSDWVDGTSVTGVTWTVEECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPLDLEEERVVFSVNIHSHPTEFFRKAIDGTWLNKNTENIGVSND*
BBAY94_100435092F041247AGGMTNFYSIQADKIKFNLDMLVDMYKTIDQTKWVHRQDKLPQYWPIDENDTFDRNHEFYKLLKENIHADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEEDNDWSKSPVIFIDQFDQVVEKVEHTNNTPIIYSANYMHGTIKSLDNTNDRITFVVDIKYWFARVRSKYNNGTLFTNNKAFWSMA*
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