NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY92_10001233

Scaffold BBAY92_10001233


Overview

Basic Information
Taxon OID3300000947 Open in IMG/M
Scaffold IDBBAY92_10001233 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6336
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
BBAY92_1000123315F005132AGAAGMVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEHIEAKVVSESLSTKEEGLFKLVKYSLAMYSATAAIAVLRSETARTKNEEGKSDQRSLDAISSSIESKTSYINKRIVNYILDNPILKARATAEGCDNDLFEAEDVYQDASVFYPNSKTSEDC*
BBAY92_100012336F013231GGAMESNRDYHTCKLIRSKVDILLEEMSVLFTNIGIDSTVEEIQEAYRKEKELIERIAEIDPVKADNLRSSY*
BBAY92_100012338F008384N/ALKRNTRYNKKHIEEEAVLSLNQGRITEPLGAFIYQRAIEISGSAFITNGDKELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGHRIKGKVVCIENGERLTRLVKYVKDDNISERL*
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