NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10032476

Scaffold JGI12270J11330_10032476


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10032476 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3029
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F008922Metagenome / Metatranscriptome326Y
F078979Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_100324762F003175GGAGGMNRIELSGKSQGKGRNGYFQLHSVELMNMPTDPDGQVLNIDFYPRRRVNCVGPARLLLNLEDATKLARFFGEAVESSSPPVASIANGELVCECGHRGTPRLEESGYQVSHTLVEIVGDTIIASGWDGSSRAVSEDGDAYWLMCEGCRKLHPLLPELHIDWR*
JGI12270J11330_100324763F008922AGGTGGMTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELVTGGLCDEERELAGDRVRKRHMPAATRDTGALYEKDLRRANR*
JGI12270J11330_100324765F078979N/AMTRATGELSEYMLRAKERQAGSEHFTDYESARLNSADAREWLEGLKSYTRRWIEEHRNGGADNWTVGACAESTAAFR*
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