Scaffold Draft_10071609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Draft_10071609

Scaffold Draft_10071609

Overview

Basic Information
Taxon OID	3300000558 Open in IMG/M
Scaffold ID	Draft_10071609 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3328
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Syncrude, Ft. McMurray, Alberta
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095163	Metagenome / Metatranscriptome	105	Y
F102109	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_100716094	F095163	N/A	MIYANHLYNLATSKPRITMAEIEAICIDKAKQGEMYCWVFNPIADEDVQKLRTNGFEIERHNNSSYRIDWAKPNNL*
Draft_100716095	F102109	N/A	MNTQKSLIEIGIAYNQEKMQVMMAMQMNGKGLVDLVSSYPDHVAIVAFDYAIKSYPYGASGNHERGIRNGTTVIGENMWPLCTPSDDGYILELSNFGGEPQQDVAWYSFLSDSDFMLMYSNKKWTAGYMNDGRWLAIEGMVNEVVANANSMPFHDAFEYMLRMVSAIKVGAEWCDI*

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