NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P_2C_Liq_1_UnCtyDRAFT_1001388

Scaffold P_2C_Liq_1_UnCtyDRAFT_1001388


Overview

Basic Information
Taxon OID3300000418 Open in IMG/M
Scaffold IDP_2C_Liq_1_UnCtyDRAFT_1001388 Open in IMG/M
Source Dataset NameMarine microbial community from Union City, CA, USA - Pond 2C Liquid 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9243
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameEden Landing Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.569167Long. (o)-122.1019Alt. (m)Depth (m).13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022889Metagenome / Metatranscriptome212Y
F023556Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
P_2C_Liq_1_UnCtyDRAFT_10013882F022889N/AMSRPVPNIYVGNSVKKRDRLSFKNFVLEVIEDTFINEFEPTSASLDSDTQTFFTLFLGPTDKSGSIPDIAGYRFTYEDLQVDNVIDYIDVFLYSVKQDSSKYDVELYDGEGNQLTTGQYASGSKEIRLIFNEDITRIPTEVDRTDFVIKGKITEIEE*
P_2C_Liq_1_UnCtyDRAFT_10013883F023556N/AMNIFTLKNIMKEVNAPNSYEGIPSNKENGDRYEFNHPLYWVFKIENMRIKTLDSRLRDKRKPHARFDVFLSFTGDDSNGEVFVRSEDYNYEQVGNDFYVKLIKANFPTQDRFGNKYTLSAEDDSIFIKGDIEPIN*
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