NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LV_Brine_h2_0102DRAFT_1005666

Scaffold LV_Brine_h2_0102DRAFT_1005666


Overview

Basic Information
Taxon OID3300000405 Open in IMG/M
Scaffold IDLV_Brine_h2_0102DRAFT_1005666 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2872
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002703Metagenome536Y
F019583Metagenome229Y
F031312Metagenome183Y
F048679Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
LV_Brine_h2_0102DRAFT_10056662F019583GGAGMKDHHAATLDHYQGLVDQLADEDAALAKYRADFAEKLMQEYSEDNHKLSWLVAEWLGHSSSQLEGYVLSSIKDPDFDMGEVWRDWLTDRFDDMAKSMDSKQIDAFQEEYF*
LV_Brine_h2_0102DRAFT_10056664F048679AGGMRLKVYLLLALAHYCGVQQGALQKASGLGANTLSVWKTNNRHPTAERFYMAQAALIDLAGLPVEYKDLEIDAVARIVIK*
LV_Brine_h2_0102DRAFT_10056666F002703GAGGMSTASLADKLAHAKRESKSLKAQLEASRTAYDELLAAFDKSVYLPDPVGRRTIFKIARDKNRG*
LV_Brine_h2_0102DRAFT_10056669F031312N/APRGSQLARKLTVHDVQAMRLNVHGRTDKQQAKASGVSESMVYKIRKGERWGVVR*
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