NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P_2C_Liq_3_UnCtyDRAFT_100120

Scaffold P_2C_Liq_3_UnCtyDRAFT_100120


Overview

Basic Information
Taxon OID3300000369 Open in IMG/M
Scaffold IDP_2C_Liq_3_UnCtyDRAFT_100120 Open in IMG/M
Source Dataset NameMarine microbial community from Union City, CA, USA - Pond 2C Liquid 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)22391
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameEden Landing Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.568817Long. (o)-122.10315Alt. (m)Depth (m).11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F040050Metagenome / Metatranscriptome162Y
F041087Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
P_2C_Liq_3_UnCtyDRAFT_10012010F041087AGGAGGMDLWDKVCEQIERDINDPLNDLQALYLMLQQVPKDVLIAYLPEEESADVG*
P_2C_Liq_3_UnCtyDRAFT_10012018F040050AGGAMSKLKQRADDMNDLFEIVEDLKDIDTFGSDTTAFEDIFHKWNARLIDAQEEAERQYELFEMDDGA*
P_2C_Liq_3_UnCtyDRAFT_10012031F001588GAGGMQNTTTKTNNVFLTAANAAIAVHVNNTVVATDVQTADALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFASDASAHNIIDEALEALA*
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