| Basic Information | |
|---|---|
| Taxon OID | 3300000259 Open in IMG/M |
| Scaffold ID | LP_J_08_P26_500DRAFT_1016743 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_08_P26_500 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1088 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | P26, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000659 | Metagenome / Metatranscriptome | 952 | Y |
| F005610 | Metagenome / Metatranscriptome | 395 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| LP_J_08_P26_500DRAFT_10167432 | F005610 | AGG | MKTFKEYLKEADSEEVRDAKKVFTSLQEMYPKIPKFPLVFKNLKGKGSGYLETSKLKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAVTKGDLGHNKRHADLTNKLAQKFGLV* |
| LP_J_08_P26_500DRAFT_10167433 | F000659 | N/A | LTFKEYLKEVNSKYIVSKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWIKSQDKVDIAARGEIGDV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |