NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB18AUG2009E_c003100

Scaffold TB18AUG2009E_c003100


Overview

Basic Information
Taxon OID3300000203 Open in IMG/M
Scaffold IDTB18AUG2009E_c003100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2614
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029335Metagenome / Metatranscriptome188Y
F036063Metagenome170Y
F091089Metagenome107N

Sequences

Protein IDFamilyRBSSequence
TB18AUG2009E_0031005F036063N/AMLVLKTTQDYINFSTTQWGVNFPITAENLQFNTLDIQHNINALVAFNKDNNVQNLHDSIMQQDTFVREYYIAMLEYIEQNALIPANMFCCV*
TB18AUG2009E_0031006F091089AGGAGMYNTLAKAKLVFNKRLQSYKLVVAFNVHTTTREDKDGNTKIVHLFPVQSKCAYVSGDLPKSNIKNELARALKCASAVARTDNILIVG*
TB18AUG2009E_0031008F029335AGGAGMRTITTQNNGNIYQMDITEAIEIVQDYARLNTGGDLLQATEEMMQLADANDLPIRQKIGIRRFVRDMSQLLAPVDA*
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