NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB18AUG2009E_c000054

Scaffold TB18AUG2009E_c000054


Overview

Basic Information
Taxon OID3300000203 Open in IMG/M
Scaffold IDTB18AUG2009E_c000054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33080
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (82.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F014955Metagenome258Y
F017107Metagenome242Y
F017287Metagenome241Y
F029048Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
TB18AUG2009E_00005440F017107N/AMTDYSENYLRIQQLLKKYHNATLKNDFAKATLLAHDIADETIKLEFSTYEQVRKSWLS*
TB18AUG2009E_00005443F014955AGGMGMLERYIVAATGLGYLIVGLTQFIKGSPRNTFIWLGYAAAQIGLWMNLK*
TB18AUG2009E_00005447F007166GGAGMDEMAQVMQEMEQRLEIALDNMEYGTELAQDDIDVIRAACGKPNNKRNVLLQSVFNDFGTVFGGAK*
TB18AUG2009E_00005450F029048AGGAGMLSHIRDVIGDKAKISTEPFGVDEERQLIAFEVNDLAAVIQDVIRTCADCCVNVADREAILELLN*
TB18AUG2009E_00005452F017287AGGMEDYIRRVFEGEAPCDKCKQAYKCQVDELACRSFSFYVRTGTFSPDTPRNPTNHLFNLIFKDDDYALKNYLKNLKGEQGDLL*
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