| Basic Information | |
|---|---|
| Taxon OID | 3300000151 Open in IMG/M |
| Scaffold ID | SI53jan11_200mDRAFT_c1029902 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 200m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 938 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet 53, Vancouver Island, BC, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028942 | Metagenome / Metatranscriptome | 190 | Y |
| F060128 | Metagenome / Metatranscriptome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SI53jan11_200mDRAFT_10299021 | F060128 | AGG | MTDNFDFGFSAVSTDEFKKTQADTEPAPSTGVSSTEFNELKEKIDSISSLIQALGDKEDTSLFDETGETVKATGE |
| SI53jan11_200mDRAFT_10299023 | F028942 | N/A | ERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |