| Basic Information | |
|---|---|
| Taxon OID | 3300000128 Open in IMG/M |
| Scaffold ID | SA_S1_NOR08_45mDRAFT_c10003046 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7941 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norway: Adventfjord, Svalbard Archipelago | |||||||
| Coordinates | Lat. (o) | 78.237209 | Long. (o) | 15.677776 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022460 | Metagenome / Metatranscriptome | 214 | Y |
| F032719 | Metagenome / Metatranscriptome | 179 | Y |
| F048317 | Metagenome / Metatranscriptome | 148 | Y |
| F105240 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SA_S1_NOR08_45mDRAFT_100030461 | F032719 | N/A | GLSEGLINYDADTGKMQLKNAELMKCFEISGIDIVNCKIQGNIIGCDIFSTELINSSMFECNLFGATDTIDSKIEDSYVSRHVAVKDSYVFGPRGVFSGDMEGGIFRKGRATEFAKFENTEIIEIEKI* |
| SA_S1_NOR08_45mDRAFT_100030463 | F048317 | N/A | MIRDIYSRDVQSPKYNDQTLEVSDTLSQLILKIENCLFTRKGDVLGSPGMGANLNDLIFSLVLNENTIQNNINGQITAYCLPNTGGFSVDCKVSFFSTDERDGAFVDIFVNEQRVIGALF |
| SA_S1_NOR08_45mDRAFT_100030465 | F022460 | GAGG | MATVKDNNTGYPSLYRATREEGWILKNTGYDYADNLLRNTMSPYMFRNRRLRAFLEIYLNPIMVFYISRVKYLRIYFNYAVPKWYQKIN* |
| SA_S1_NOR08_45mDRAFT_100030467 | F105240 | N/A | MAISVTEILGTDSLSGSRLVINDNFNVLASEINSMEVYISPSAGTITNLNNLSSEALRVGLSTILLDINASTFDILTNVKMTGNLNMTGAGIFRNDTNIQTLDSVFAGGNPISVGTSTAIPAYTMNRVGNTTAAAIDIILYNGSIGQEIFFIYTEGSGDVDISGFNSNLVLPGATTSPNKLTLNAIGQSVHLLAINNGQGQAVWFLVGGQGYVIA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |