NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_OR_ARG05_123mDRAFT_c1000143

Scaffold TDF_OR_ARG05_123mDRAFT_c1000143


Overview

Basic Information
Taxon OID3300000118 Open in IMG/M
Scaffold IDTDF_OR_ARG05_123mDRAFT_c1000143 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7780
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameOR site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.80407Long. (o)-68.288208Alt. (m)Depth (m)12.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F004192Metagenome / Metatranscriptome449Y
F005454Metagenome / Metatranscriptome400Y
F005817Metagenome / Metatranscriptome389N
F023593Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
TDF_OR_ARG05_123mDRAFT_100014311F023593N/AMSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG*
TDF_OR_ARG05_123mDRAFT_100014315F005817N/AMRSNLLSRLKPEFKQGLEDNKTRYPASINDLEFVLSQLTFYNDLSVNQVLNLFLFSDMQYLDRKNFDWRYGEDIFELENNVA*
TDF_OR_ARG05_123mDRAFT_100014316F003647N/AMAMCEWTLADVKNRASNKAFAKVTILGLDIEEQKRNLRSGNIGGITYEEAKQVVTGYETELQIWNYIAELIEKQ*
TDF_OR_ARG05_123mDRAFT_10001432F005454N/AMRIIKHYNSHFPERETYKCTIRYTTKFGTLDETTQWRDDQLKNEDYYKSLEESNRKAAGVFYQTLTYKGD*
TDF_OR_ARG05_123mDRAFT_100014321F003058N/AMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADIEFGTITEDEIVAEELVKLQNRLNQLEAEEDYEAAGIVANKIKHLKNKYDL*
TDF_OR_ARG05_123mDRAFT_100014325F004192N/AMKNDFNEWMASIGNIYYSDNELMLHAFEKLDDYEEI*
TDF_OR_ARG05_123mDRAFT_10001438F000352N/AMRNIKLTENDCTFVHYVLKYYANHTENLDSDDKDEIYEVANKFK*
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