Scaffold DelMOWin2010

Basic Information
Taxon OID	3300000117 Open in IMG/M
Scaffold ID	DelMOWin2010_c10000062 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000117 Open in IMG/M

Scaffold ID

DelMOWin2010_c10000062 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	52816
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (89.86%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

52816

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (89.86%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022786	Metagenome / Metatranscriptome	213	Y
F034398	Metagenome / Metatranscriptome	175	N
F040080	Metagenome	162	Y
F042639	Metagenome	158	Y
F044813	Metagenome	154	Y
F052272	Metagenome / Metatranscriptome	143	Y
F061813	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000006211	F022786	GGAG	MTDLIIDQEKLAALEQAGLLKGRYYIVLEPLEDEDGDEDGFAIRAYATRDTQVEVDGTTMFDPTYVILQGLLGAVHEDFDNLYDMGLERVTLEALGEVVPEEELKPEHRDRIKSMEGNVITAKFGELQ*
DelMOWin2010_1000006214	F042639	AGG	MKTADIKKVVELQGKIIKLKDRIMKDVERHNTMVIDELRPLLDDVQYATIYQVGDMTYKRGKVFCQLDCNDYGLGIKADGLSTLRRIVVENKDAPSDDKESGSSASLSK*
DelMOWin2010_1000006226	F034398	AGGAGG	MIAEQYRNIKPHFVHAYHVPMVYRWSCILLDQDTENPPFQPARYFVVNVFAETKDAVLDCLGEEYPWCDIMYVDKALGGHSDDDFLESWLHHFDAREAIPVREAPHGTNYNK*
DelMOWin2010_1000006227	F061813	GAGG	MALTTTSRNENKTRVDYLVYKQVTEVLALVKQANETLNDTGDIDSDSLDNASSHLKCAIDMLDHYLRANA*
DelMOWin2010_100000623	F044813	N/A	MAEQKANLLNFSIELNRDGNIEFNLDCVDTVGMERTLRSLGDPAYPHKIGNIVRHYFRTLQDKIKEERA*
DelMOWin2010_1000006231	F040080	AGGA	MKTLETFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAADDLKPAKDNRALCSSHYRMLAILNEYGVMHREHVARLLGVKDQTVMQMMHVCRHHGLAHLKTRKGVVSIQSLADGVSDNTNFKI*
DelMOWin2010_1000006232	F052272	GGA	MKTETTLNFTAEQLNELKRIVDTIGWATRDDKTGHIDAYVSENRVKFAQNLAGVLGRMDTAAIVGSSEGI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOWin2010_c10000062

Overview

Ecosystem & Geography

Associated Families

Sequences