| Basic Information | |
|---|---|
| Taxon OID | 3300000116 Open in IMG/M |
| Scaffold ID | DelMOSpr2010_c10002485 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10713 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009208 | Metagenome / Metatranscriptome | 321 | Y |
| F022881 | Metagenome / Metatranscriptome | 212 | N |
| F063659 | Metagenome / Metatranscriptome | 129 | N |
| F077038 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSpr2010_100024851 | F009208 | N/A | MANNKSSDGRVTAFTLLFAFAVVLAAYLSGPENNFWMAPGAVMYMVLLLAIAIPRWPAVGDDTSLVKNLSVIIAILMTPSIMAPILGIQTSTNVYNYWRSIMIPLYAGYAFQKRGMSGTGILVTFSTPLIVMLSMIFSINPLPNVKIPGTNVTNN* |
| DelMOSpr2010_100024856 | F022881 | N/A | MSELPISDQFKEAIAELEGIKTQLNEAQKAIKVLKERETSLKTFIGGYMKAQKIDDVQTRGGTKVTQKTSVKKPAITKKILMDELPNYIEGGQERLNQIIKEIEDKLEPKETSSLQLKLKKKSEE* |
| DelMOSpr2010_100024857 | F063659 | N/A | MVGSNLLDYTPIASEPQVIEDYDNEEEEGFVDPDEYEYEDWIAYYSDELWNNWELYREHCYDNMVPVSLTFSEFCKNEYYY* |
| DelMOSpr2010_100024858 | F077038 | N/A | MVRLPDVTSTKVIVPTILFALLSPAVTGMDGFVDRLGMTSVFGILYIIILRGVMKYVVRASEVYLASVMYFLLSGMTTDQTMIVRNTFLYWILFAVIRSQSPLEF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |