NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2011_c10052804

Scaffold DelMOSum2011_c10052804


Overview

Basic Information
Taxon OID3300000115 Open in IMG/M
Scaffold IDDelMOSum2011_c10052804 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024541Metagenome / Metatranscriptome205N
F029927Metagenome187Y
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2011_100528042F091789N/AMXELWHYRRPTWKQIKYEWGDLMRSKGLQQINRXPPTGYEVAPDLITEQVEGEGFVIYPKGYDPIEINHTLSSRASIYGXRYCGTLNSF*
DelMOSum2011_100528043F029927N/AMKPVNTKSLFHXLCTTLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE*
DelMOSum2011_100528045F024541N/AMEFFDMIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHTENA*
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