NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2011_c10002236

Scaffold DelMOSum2011_c10002236


Overview

Basic Information
Taxon OID3300000115 Open in IMG/M
Scaffold IDDelMOSum2011_c10002236 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12377
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F016668Metagenome / Metatranscriptome245Y
F028770Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2011_1000223618F016668AGGAMIPVGQLRLMLRKAGLEFVITRVEGNVAHVNILVAEGSDVHS*
DelMOSum2011_100022362F028770GGCGGMVSIGVLGVMMVCMSSLAEHCQVLTSPHIFSTVEECQASIVNEATKIMADYSHATIVPNCVALRYNGEPA*
DelMOSum2011_1000223621F000375AGGMTKLYDLEPMILDCWRVCNDLETVFKQIGDGEREPTHDEMMNTLMGMQQLYEWKFEQLFYKYEELYRDRQ*
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