NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10089115

Scaffold DelMOSum2010_c10089115


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10089115 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1329
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F003154Metagenome / Metatranscriptome504Y
F024562Metagenome / Metatranscriptome205N
F044809Metagenome / Metatranscriptome154Y
F086185Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_100891152F002747GGAGMANDANRFFVDVTLEIYVPDQGCGENAVKNENSDAEWFSNEICSQIPKAINKNFQHSERPYSVNWAHKGKVERG*
DelMOSum2010_100891153F024562GAGGMAIIYEKNFTDPNERIVRQFTNCCGASDKGTEFGIVCRGCYSPIEGYMADGDDSQEEFENYIENDSVLERFRTFMNENFFNYEEWHEHIIKDIGG*
DelMOSum2010_100891154F086185AGGAGGMTEPYITXGDLVEILSTDLTEAEIESFLYEWGIA*
DelMOSum2010_100891155F003154AGGAGMDNVSHAMNIFGGYYETERGWRHYRAQGKTYDVQFNPRTLEWKCTCPHHIFKRVQCKHIKEIQEGKK*
DelMOSum2010_100891156F044809GAGGMPTEKQQWLNKYNTYFAATEYNRQHYGKRIKQLKKML
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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