| Basic Information | |
|---|---|
| Taxon OID | 3300000101 Open in IMG/M |
| Scaffold ID | DelMOSum2010_c10029258 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3056 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016595 | Metagenome | 246 | Y |
| F051455 | Metagenome | 144 | N |
| F063835 | Metagenome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2010_100292581 | F063835 | N/A | NETKMNYLLGLFEEEKKELGSTLWGCYNALTHWSSHTDYKVERYNEETKKLETISGGRTNANKPNVERQRADVVRELLTSDAWQSLEMASA* |
| DelMOSum2010_100292585 | F016595 | GGGGG | MAYFFRCKVCDHKETFQDTFEIPLVALEGSLADYESVICNGCITHKIRLKGNYIIINRRS |
| DelMOSum2010_100292589 | F051455 | AGG | MNLLPQTNNTREISPQQEQFLSNLFDNGGNVTDAALSAGYAKGSVTWLKTSLADEIINRTKNILSMHAFKAATRL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |