| Basic Information | |
|---|---|
| Taxon OID | 3300000101 Open in IMG/M |
| Scaffold ID | DelMOSum2010_c10001092 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22280 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (20.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005706 | Metagenome / Metatranscriptome | 392 | N |
| F016832 | Metagenome / Metatranscriptome | 244 | Y |
| F020903 | Metagenome / Metatranscriptome | 221 | N |
| F029278 | Metagenome / Metatranscriptome | 189 | N |
| F038672 | Metagenome | 165 | N |
| F043411 | Metagenome / Metatranscriptome | 156 | N |
| F056150 | Metagenome | 138 | N |
| F073424 | Metagenome / Metatranscriptome | 120 | N |
| F080238 | Metagenome / Metatranscriptome | 115 | Y |
| F081203 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2010_1000109211 | F016832 | N/A | MSRTINYTTRTFYVPADKLEILIKFQNKCKENGHKSYSEVILKLMEGYNNG* |
| DelMOSum2010_1000109212 | F081203 | GGAGG | MDKYEFYYRKKQEWDFWQCNERHNVLSNRLLNIIIQAQYNKRLITKFKLTNNDIEIHQNRFSNLITEVVKISLELKDLAINYNPKRIQNIIIILTKIKNYNNETIKNS* |
| DelMOSum2010_1000109217 | F005706 | GAG | LKALGLSSLDIQTMLMNGMTMPEISKKYNIKYIALIQAFKIQKKEFKYIDFKQPKKEVEDIKDVSFTSERLYTEDSLNDNELLAYYKYEQKNHAYYDSQ* |
| DelMOSum2010_1000109221 | F038672 | N/A | MDELDVILRKNKLDIMIIKASAEVEKTNNKVKKEGLEILMDILELIHDLQHEIRQDNRLISKLKYENAVAYKENAILKADFSKYKHQLIKAELETPNKIKKNG* |
| DelMOSum2010_1000109226 | F056150 | N/A | LNKKLIKKIENFILWIGREYNVVELQDFKQDIFMILLNKGEDFIIQLDKENSVKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIDDIETYSNSCFKDQVLKDLINSLQGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKEKWSLNEFYS* |
| DelMOSum2010_1000109230 | F043411 | GGA | MFKEKMLKRRLTYNNKRVFIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVDFK* |
| DelMOSum2010_1000109231 | F073424 | AGTAG | MKLTPKEIKEQKAKFGSEAVNYFIRFMEARRKWRRLPDSFIKQVIENSEKQ* |
| DelMOSum2010_1000109235 | F029278 | N/A | MEITIPTKWSDVTIGNYINLRPVLNSDLQPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKDKRFKIGGQWYEFKLDAKKLLFGEYINSMEILQNAKDDQEAIFNNLHHILTTICRPVKKTIFGWKYIKVDGEILRKTADNFLNNMPITIAYPIGVFFYSHSEDLTKAIKTSLMDQAKKMTREAKKELDLLRDGDGGVH* |
| DelMOSum2010_1000109237 | F020903 | N/A | MAEQLDIFGFDTDQLEEVKVDNPTTLSEVFNNIAADMVYCLKQSVTKEGLVYKGKLHDSIRMPVKMFGFKMIATLFLADYYDYLNKGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKKGPSVSHIKAWSKSKGLNEYAVRNSIARTGIKPRYFFDNCMQQTFYGEAFNRFKTDIRIVSGERIAKGIKEILKK* |
| DelMOSum2010_1000109239 | F080238 | N/A | MKEKETEFEKMLRNLESKPVPERTCNIDDETCESCSG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |