NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_c141245

Scaffold Draft_c141245


Overview

Basic Information
Taxon OID3300000052 Open in IMG/M
Scaffold IDDraft_c141245 Open in IMG/M
Source Dataset NameCoal bed methane well microbial communities from Alberta, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12819
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameAlberta, Canada
CoordinatesLat. (o)52.119Long. (o)-113.78Alt. (m)Depth (m)686
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002997Metagenome / Metatranscriptome514Y
F022651Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Draft_1412451F000934GAGMSLQTILSISESVGINDQRFVGQTVSRNQKITTSEILTVVPFAFELKPMNYLLYSQNRGVLNSLRIPDKALTQYINFGSTGWVNYIQYQGDMTPIQIGNCQWQTSSANKNLVLGSLPSIASSRYLFRAGDFVQVGLYSYIVTADVTRGPNPTVNVPVHRSLIDALTSTVACVAGEFGTTISMGGDTYT
Draft_1412456F022651N/AMTVTVKDNSDLLNFLVTQADSRKDWFGFTQQRLTAVALAHDIARHHADKLTPAQAVQYALSLNEEIYHKIIKTTR*
Draft_1412459F002997N/AMAIARFESIAINNLTFSKSDFGEGATVQTKWFDTRARVSDVANSVKIADKYRLYQELTQFTLNYTPNMKQIVDGQDQYSITWRGQDWRITDVREANDRMTVMFLCYRNDPVTAV*
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