NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_c009256

Scaffold Draft_c009256


Overview

Basic Information
Taxon OID3300000052 Open in IMG/M
Scaffold IDDraft_c009256 Open in IMG/M
Source Dataset NameCoal bed methane well microbial communities from Alberta, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameAlberta, Canada
CoordinatesLat. (o)52.119Long. (o)-113.78Alt. (m)Depth (m)686
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016144Metagenome / Metatranscriptome249Y
F017607Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Draft_0092561F017607N/AMNINTFYFKKDIVKSREAFNELEKVRLNXKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHXPYKFTPHIDYKPKYTSPYYAPQETGFG
Draft_0092562F016144N/ARTQXAXGGIAARGAXLAAENADYTLTNLEFRCVRYHMGPEFDIAEANVLQSGNKYKLWFPNYTVQSGRPVPSNNKATTERFSISTQSLDYXIGTFRLPTYDTPGKPLNTLISSQDALEEGSSRATADEQVNAGLRRVYNQSKYFAHNGDSIVTTKWRIGNNSYEPQNIDEQFNSLLQHFNINQDTMSGIYPGINSIGAFRDHSYASICSLNFPEKGNVYTVSGLDTEQTPASIEWIVTSSTFTPAGGLAGNYAITSGVNCLPYLICAYSSHLEIGAGRVINLIP*
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