NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPgaii200_c1120811

Scaffold INPgaii200_c1120811


Overview

Basic Information
Taxon OID2228664022 Open in IMG/M
Scaffold IDINPgaii200_c1120811 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1437
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y

Sequences

Protein IDFamilyRBSSequence
INPgaii200_11208113F001079GGGGGMEPSLQPSSVLPYVAWSSSSSALIPADQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDYRVHCYTTWDTPEQLEAFLERGYTFERMLADVAGLQADPTLVMEKVF
INPgaii200_11208114F000805AGGAGMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIALVVVILLWVWQYRSTRQKANIYPVDSFGGYTTELAGPATAFFLILTVGLTAFAVVLIVGHIVWGQRF
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