NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225759761

Scaffold 2225759761


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225759761 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40220
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (13.85%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F001129Metagenome / Metatranscriptome768Y
F001345Metagenome / Metatranscriptome718N
F003267Metagenome / Metatranscriptome496N
F003459Metagenome485N
F003660Metagenome / Metatranscriptome474Y
F004837Metagenome / Metatranscriptome421Y
F009057Metagenome / Metatranscriptome323Y
F009318Metagenome / Metatranscriptome319Y
F011581Metagenome / Metatranscriptome289N
F012449Metagenome / Metatranscriptome280Y
F020667Metagenome222Y
F021095Metagenome220N
F046907Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
2225171896F004837N/AMTQDEFVLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAQDNQHTVTHALTNQSPQQ
2225171897F012449AGGMDTLIFPLLISSLTALAIAEYHVLPQAWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQITNR
2225171898F001345N/AMASAETVILDLYRTGEIRKACLTXTGGDPLWRDLEQECVLILLEKDPAKILQIHEQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQSEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPAD
2225171905F009318N/AMHRLLLLFLLTACTNDRPWTVIEVRAKGDACEYVLSRSNGFGPQLKNITDSCGKYQLFQTIKP
2225171913F003459N/AMNHLVTIPKSDISKQDIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKSTEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYSQDQQWSDLQASMKAREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFK
2225171916F003660N/AMTHETKTKLKAALATGYIVLTTCLGVAFFGRFILAIITN
2225171918F011581N/AMTYHSTRPAKALTNALERLMIAVSPQDLEQNHALLCEYRRACELLGYDPAKAQWSGIHEVSASQLPAEQDHTVCYYPLLNPEE
2225171923F009057N/AMPTFRKFAFPDGATADKVLGEFLNPLDFAVAVGEIDKAVCVDVLFHDTCPEPLAAFVVWPKPCGVHAFSGWEEQYTADYQEFATSPQ
2225171926F001129N/AMLGQGGTMEFVDAAVSGKNFDFLVVNAAATFTTLTGSGGEDLLTAYAMSGKSVSAGIVISGXNGGKITAVTPSVGSVIGYTFL
2225171938F020667N/AMSVTLIAYPTTSFVNDLAAWNNFNTRADADGATAKEEACFDCLYARFAPFNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGSASSGYVYGVVDAVGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFAQAGFRYSSNFFNSVLFNKLVIPYAAGTMPVNLSGSNIFAQATGNTANFIKGANQTLAFPKDTPAPFYDRPGYWVASSSTFVAPALPTRWNVDVTLNVSGSISFSGSIRCNMSIRNITNSTDVSVISNITARTQNQFTVRFENITIPADITANVGFVITADTVVATQNFSVLSGATVQWTCLENPVGIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLIYIEPWKDFYTSGVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITGQTPWLYWYGLEEDGFAATTPITSLPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTEFAAKSTSPPRSDPSGLFNGPIDTDPVDPGYEAPVNPELPSEG
2225171939F021095N/AMSIFVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELAGWNLGTFFKFQDIFSGVRPLTTQERFTVYKGGSNFLAINGTKYSAFLPGDSWLVSARVAYKSVNYDFAVTPNLSGTTDFNIQRFACGPGQLSGSIPAFSGAVEGDFYTVRFVSDLASQSDTTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225171942F000557N/AMKLQDLTIDQFQRIAAXEFSPVLTXXDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKAHAKIGDVWGVV
2225171945F003267N/AMKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKDILENSLVAAKIKVVVTRTNAWEQATLTEMYRASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNIVAWERCLAELQNVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPVREHRWQAEHWIGKAEGMTVYNSCKGWPAPDKFVITF
2225171949F004837N/AMTQDEYLLAQKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANQQTVTHALNQSPQR
2225171954F046907N/AMPDGGKPVLITDNEGLQVVAWYVADRKMWYSENHSWFTSEVLYWMPIPEIV
2225171957F009318N/AMWVECLYLWTMRRILLLLLLTACTNNRPWTVIEVRPKGDACEYVLSRSNGFGPQVKIKTDKCGKYTLFQTINP
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