| Basic Information | |
|---|---|
| Taxon OID | 2222084000 Open in IMG/M |
| Scaffold ID | 2222101959 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Alabama State University |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 504 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alabama | |||||||
| Coordinates | Lat. (o) | 30.15 | Long. (o) | -88.446 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001040 | Metagenome / Metatranscriptome | 795 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2222110591 | F001040 | N/A | LSRKGGFGFPFLLFLIFIIKVTIWAVPRTKYEMFADIRYDGRLVDVLDRIRAIRLVLMVHIEQDLGPNKELVKIKILTPYPARRTFQAIRQLCLGKIETLKDMSYRETTLTKLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |